IIS Instruments


The Ingenuity Pathways analysis software, provides:


  • Identify the most relevant signaling and metabolic pathways, molecular networks, and biological functions for list of genes/proteins
  • Predict the direction of downstream effects on biological and disease processes
  • Compare affected pathways and phenotypes across multiple testing conditions
  • Quickly gain knowledge on genes and chemicals by browsing categorized and curated publications
  • Dynamically build and explore bio-molecule interaction networks supported by literature findings
  • Identify potential biological impacts of custom networks
  • Generate testable hypothesis for your genes of interest

The Ingenuity Variant Analysis (IVA) software, provides:


  • Direct upload of VCF files
  • Annotate and interactively filter variants
  • Link variants to biology using the human-curated Ingenuity Knowledge Base
  • Identify variants in genes that interact with those genes known to be associated with Causal Network Analytics (provided by IPA)

The CLC genomics Workbench and CLC genomics server, provides:


  • Resequencing and variant analysis
  • Epigenomics (Bisulfite sequencing, ChIP-seq)
  • Microbial genomics and metagonomics
  • De novo assembly
  • RNA-seq analysis and small RNA-seq
  • In-silico Restriction enzyme analysis
  • Protein secondary structure predictions
  • Microarray Differential expression analysis

Open Software

The toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size.

Open Software

  • Is an open-source bioinformatics pipeline for performing microbiome analysis from raw DNA sequencing data.
  • QIIME is designed to take users from raw sequencing data generated on the Illumina or other platforms through publication quality graphics and statistics.
  • This includes demultiplexing and quality filtering, OTU picking, taxonomic assignment, and phylogenetic reconstruction, and diversity analyses and visualizations. QIIME has been applied to studies based on billions of sequences from tens of thousands of samples

Open Software

  • REDCap is a secure web application for building and managing online surveys and databases. While REDCap can be used to collect virtually any type of data in any environment (including compliance with 21 CFR Part 11, FISMA, HIPAA, and GDPR), it is specifically geared to support online and offline data capture for research studies and operations.