The Ingenuity Pathways Analysis (IPA)

• Identifies key molecular pathways, networks, and biological functions linked to genes and proteins.

• Predicts downstream effects on biological systems and disease models

• Compares pathway changes across different experimental conditions

The Ingenuity Variant Analysis (IVA) 

•    Enables upload and filtering of genetic variant data from VCF files.
•    Uses a curated knowledge base to associate variants with biological function.
•    Supports discovery of causal genetic interactions using network analytics.
 

The CLC genomics Workbench & Server:

•    Offers tools for resequencing, variant discovery, RNA-seq, and de novo assembly.
•    Supports epigenomic analyses (e.g., Bisulfite sequencing, ChIP-seq).
•    Includes tools for microbial genomics, structural prediction, and differential expression analysis.
 

Open Software

The toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size.

Open Software

A bioinformatics pipeline designed for microbiome analysis. Supports full workflows from raw sequence input to publication-ready visuals and variation metrics.

REDCap

A secure web-based platform used for collecting and managing research data. It accommodates regulatory requirements (e.g., HIPAA, GDPR, CFR Part 11) and is designed for both online and offline study environments